ProViz is an interactive protein exploration tool, which searches several databases for information about a given query protein. Data relevant to the protein like an alignment of homologues, linear motifs, post translational modifications, domains, secondary structure, sequence variations and others are graphically represented relative to their position in the protein. The tool is developed by the Davey Lab in University College Dublin by Peter Jehl, Jean Manguy and Norman Davey.
The project is funded by a Science Foundation Ireland Starting Investigator Research Grant (SIRG) grant.
ReferencePeter Jehl, Jean Manguy, Denis C. Shields, Desmond G. Higgins, and Norman E. Davey "ProViz a web-based visualization tool to investigate the functional and evolutionary features of protein sequences." Nucl. Acids Res. April 16, 2016 doi:10.1093/nar/gkw265
The ProViz tool has been uploaded to the Bitbucket Git repository and is available for download here. If you have any additions please feel free to contact us about the possibility of incorporating it into the codebase. Please look into the URL-based custom track functionality as this offers many of the required functions without any need to alter the codebase. We are also very happy to add any interesting functionality required please make any suggestions here.
The ProViz tool is available for download and use under a GNU General Public License. It allows the users (individuals, organizations, companies) to run, study, share (copy), and modify the software. However, it requires that when distributing derived works, the source code of the work must be made available under the same license. For the full license please see the GNU GPL Version 3.
ProViz - protein visualisation tool Copyright (C) 2016 Norman E. Davey, Peter Jehl, Jean Manguy This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program. If not, see < http://www.gnu.org/licenses/ >. Author contact: Norman E. Davey < email@example.com > Conway Institute, University College Dublin, Belfield, Dublin 4, Ireland. Author contact: Peter Jehl < firstname.lastname@example.org > Conway Institute, University College Dublin, Belfield, Dublin 4, Ireland. Author contact: Jean Manguy < email@example.com > Conway Institute, University College Dublin, Belfield, Dublin 4, Ireland.
The ProViz tool is available for use according to the ProViz
end-user license agreement (EULA).